nf-core / modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
See what the GitHub community is most excited about today.
Repository to host tool-specific module files for the Nextflow DSL2 community!
Config files used to define parameters specific to compute environments at different Institutions
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow training material
Assembly and binning of metagenomes
Call and score variants from WGS/WES of rare disease patients.